Syntenic dotplot between chromosome 1 of Arabidopsis thaliana and Arabidopsis lyrata and histogram of synonymous mutation values of syntenic gene pairs. Different colors and peaks show orthologous gene-pairs and those derived from a shared whole genome duplication event. Generate a syntenic dotplot of these two Arabidopsis species
CoGe's unqiue system architecture provides many interconnected tools to create open-ended analysis networks. While there is no defined place to start an anlysis on CoGe, here are the common tools used to begin an analysis: